PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g023160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 306aa    MW: 34559.1 Da    PI: 6.4038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g023160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-12511331299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++++ ++p +f+ +  g+ e    +++  ++g+sW++ l  ++ ++  y++++ W eFv++n+L  +D + F++d+++ f l v++f++
  Csa08g023160.1  51 SKSMRIIPDEFVGSTPGDFEH--SVVISVRWGNSWQLWL--EREKDDlYMIEEDWDEFVDDNHLGPNDNLFFRHDDTM-F-LEVQIFKN 133
                     4466799*****999777555..599999**********..7777777*************************87644.4.58998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-1733134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1535135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-1337132No hitNo description
SMARTSM010192.7E-1539134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.75840134IPR003340B3 DNA binding domain
PfamPF023623.5E-1051133IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-13200301IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-9201302IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.3E-7207303IPR003340B3 DNA binding domain
PROSITE profilePS508636.372265299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQSHLTNPNF RINPASKRRK MLPKGVIGKI QANVSKPCFW KSLSSGQNWK SKSMRIIPDE  60
FVGSTPGDFE HSVVISVRWG NSWQLWLERE KDDLYMIEED WDEFVDDNHL GPNDNLFFRH  120
DDTMFLEVQI FKNNGDEIMD VPLEVEPETE PLHSNTQSSY KDTATAASAS ASVEFSANGG  180
TNGRAKEGCA DIKNPERYLL NPENPYFVKT LAKKIDVLYV PKPVIQMYGL KFGPHDSTMS  240
YLLPNDKING LTKFYADGKS VCFNGWAGLC RKYNLKAGDS VVCELERSGG LVTAVRVHFF  300
NENMR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421396.10.0PREDICTED: B3 domain-containing protein At5g25470-like isoform X1
SwissprotQ680D91e-142Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z51e-157D7M3Z5_ARALL; Predicted protein
STRINGAl_scaffold_0006_24571e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-136B3 family protein